Sizes of the summary networks with the strongest links from each class for different ranges of final Bayesian scores (FBS). The fist interval corresponds roughly to a confidence score interval of 0.1 to 0.25, the second interval to 0.25 to 0.75, and the last interval to 0.75 to 1.
Number of genes (nodes) in the summary networks of the different species.
Relative impact of the different evidence types as a fraction of the total FBS for the different networks. The different types are: mRNA co-expression (MEX), protein-protein interaction (PPI), phylogenetic profile similarity (PHP), shared transcription factor binding (TFB), sub-cellular co-localization (SCL), co-miRNA regulation by shared miRNA targeting (MIR), domain interactions (DOM), protein co-expression (PEX), and genetic interaction profile similarity (GIN).
Relative impact of the evidence from the different species as a fraction of the total FBS. For most species more than 50% of the evidence comes from other species.
Species | Type | Data | |
---|---|---|---|
A. thaliana | DOM | UniDomInt -Pfam Arabidopsis_thaliana | download |
B. subtilis | DOM | UniDomInt -Pfam Bacillus_subtilis_strain_168 | download |
B. taurus | DOM | UniDomInt -Pfam Bos_taurus | download |
C. elegans | DOM | UniDomInt -Pfam Caenorhabditis_elegans | download |
C. familiaris | DOM | UniDomInt -Pfam Canis_familiaris | download |
C. intestinalis | DOM | UniDomInt -Pfam Ciona_intestinalis | download |
D. discoideum | DOM | UniDomInt -Pfam Dictyostelium_discoideum | download |
D. melanogaster | DOM | UniDomInt -Pfam Drosophila_melanogaster | download |
D. rerio | DOM | UniDomInt -Pfam Danio_rerio | download |
E. coli | DOM | UniDomInt -Pfam Escherichia_coli | download |
G. gallus | DOM | UniDomInt -Pfam Gallus_gallus | download |
H. sapiens | DOM | UniDomInt -Pfam Homo_sapiens | download |
M. jannaschii | DOM | UniDomInt -Pfam Methanocaldococcus_jannaschii | download |
M. musculus | DOM | UniDomInt -Pfam Mus_musculus | download |
O. sativa | DOM | UniDomInt -Pfam Oryza_sativa | download |
P. falciparum | DOM | UniDomInt -Pfam Plasmodium_falciparum | download |
R. norvegicus | DOM | UniDomInt -Pfam Rattus_norvegicus | download |
S. cerevisiae | DOM | UniDomInt -Pfam Saccharomyces_cerevisiae_S288c | download |
S. pombe | DOM | UniDomInt -Pfam Schizosaccharomyces_pombe | download |
S. scrofa | DOM | UniDomInt -Pfam Sus_scrofa | download |
S. solfataricus | DOM | UniDomInt -Pfam Saccharolobus_solfataricus | download |
E. coli | GIN | Babu (2014) | download |
S. cerevisiae | GIN | Costanzo et al. (2010) | download |
S. cerevisiae | GIN | Costanzo et al. (2017) | download |
A. thaliana | MEX | GSE41212 | download |
A. thaliana | MEX | GSE102248 RNA-seq | download |
A. thaliana | MEX | GSE41935 | download |
A. thaliana | MEX | Schmid et al. (2005) | download |
A. thaliana | MEX | GSE42408 | download |
A. thaliana | MEX | GSE65046 | download |
A. thaliana | MEX | GSE86359 RNA-seq | download |
A. thaliana | MEX | GSE45183 | download |
A. thaliana | MEX | GSE46318 | download |
A. thaliana | MEX | GSE12404 | download |
A. thaliana | MEX | GSE80744 RNA-seq | download |
B. subtilis | MEX | GSE19831 | download |
B. subtilis | MEX | GSE67023 v2 | download |
B. subtilis | MEX | GSE27219 | download |
B. subtilis | MEX | GSE69575 | download |
B. subtilis | MEX | GSE44125 | download |
B. taurus | MEX | GSE107891 RNA-seq | download |
B. taurus | MEX | GSE74152 RNA-seq | download |
B. taurus | MEX | GSE23837 | download |
B. taurus | MEX | GSE128075 RNA-seq | download |
C. elegans | MEX | GSE21012 | download |
C. elegans | MEX | GSE77905 | download |
C. elegans | MEX | GSE67650 RNA-seq | download |
C. elegans | MEX | GSE38997 | download |
C. elegans | MEX | GSE2180 | download |
C. elegans | MEX | GSE42592 | download |
C. elegans | MEX | GSE136058 RNA-seq | download |
C. elegans | MEX | GSE41366 | download |
C. elegans | MEX | GSE49043 RNA-seq | download |
C. elegans | MEX | GSE34650 | download |
C. elegans | MEX | GSE22383 | download |
C. familiaris | MEX | GSE29497 | download |
C. familiaris | MEX | GSE130874 RNA-seq | download |
C. familiaris | MEX | GSE119353 RNA-seq | download |
C. familiaris | MEX | GSE58442 | download |
C. familiaris | MEX | GSE110661 RNA-seq | download |
C. familiaris | MEX | GSE23760 | download |
C. familiaris | MEX | GSE20113 | download |
C. familiaris | MEX | GSE39005 | download |
C. familiaris | MEX | GSE48319 | download |
D. discoideum | MEX | GSE123780 RNA-seq | download |
D. discoideum | MEX | GSE57212 | download |
D. discoideum | MEX | GSE71036 | download |
D. discoideum | MEX | GSE8287 | download |
D. melanogaster | MEX | GSE11280 | download |
D. melanogaster | MEX | GSE60314 RNA-seq | download |
D. melanogaster | MEX | GSE38106 | download |
D. melanogaster | MEX | Li & White (2003) | download |
D. melanogaster | MEX | GSE23320 | download |
D. melanogaster | MEX | GSE71353 RNA-seq | download |
D. melanogaster | MEX | GSE31386 | download |
D. melanogaster | MEX | GSE11316 | download |
D. melanogaster | MEX | GSE67547 | download |
D. melanogaster | MEX | GSE60571 RNA-seq | download |
D. melanogaster | MEX | GSE116969 RNA-seq | download |
D. melanogaster | MEX | GSE81272 RNA-seq | download |
D. melanogaster | MEX | GSE5430 | download |
D. rerio | MEX | GSE42856 | download |
D. rerio | MEX | GSE66688 RNA-seq | download |
D. rerio | MEX | GSE83466 RNA-seq | download |
D. rerio | MEX | GSE143663 RNA-seq | download |
D. rerio | MEX | GSE34716 | download |
D. rerio | MEX | GSE109159 RNA-seq | download |
D. rerio | MEX | GSE44263 | download |
D. rerio | MEX | GSE57946 | download |
E. coli | MEX | GSE74809 RNA-seq | download |
E. coli | MEX | GSE7265 | download |
E. coli | MEX | GSE40811 | download |
E. coli | MEX | GSE90743 RNA-seq | download |
E. coli | MEX | GSE20305 | download |
G. gallus | MEX | GSE70756 | download |
G. gallus | MEX | GSE104414 RNA-seq | download |
G. gallus | MEX | GSE130500 RNA-seq | download |
G. gallus | MEX | GSE61520 | download |
G. gallus | MEX | GSE9745 | download |
G. gallus | MEX | GSE10538 | download |
G. gallus | MEX | GSE85318 RNA-seq | download |
G. gallus | MEX | GSE87247 RNA-seq | download |
H. sapiens | MEX | GSE70630 RNA-seq | download |
H. sapiens | MEX | GSE132149 RNA-seq | download |
H. sapiens | MEX | GSE122198 RNA-seq | download |
H. sapiens | MEX | GSE33315 | download |
H. sapiens | MEX | GSE103322 RNA-seq | download |
H. sapiens | MEX | GSE45878 | download |
H. sapiens | MEX | GSE11882 | download |
H. sapiens | MEX | GSE29288 | download |
H. sapiens | MEX | GSE7307 | download |
H. sapiens | MEX | GSE26440 | download |
H. sapiens | MEX | GSE41137 | download |
H. sapiens | MEX | GSE118723 RNA-seq | download |
H. sapiens | MEX | GSE72056 RNA-seq | download |
M. jannaschii | MEX | GSE4620 | download |
M. musculus | MEX | GSE9954 | download |
M. musculus | MEX | GSE7404 | download |
M. musculus | MEX | GSE51321 | download |
M. musculus | MEX | GSE29685 | download |
M. musculus | MEX | GSE10246 | download |
M. musculus | MEX | GSE129914 RNA-seq | download |
M. musculus | MEX | GSE54089 | download |
M. musculus | MEX | GSE25322 | download |
M. musculus | MEX | GSE81682 RNA-seq | download |
M. musculus | MEX | GSE45035 | download |
M. musculus | MEX | GSE127892 RNA-seq | download |
M. musculus | MEX | GSE98816 RNA-seq | download |
M. musculus | MEX | GSE68077 | download |
O. sativa | MEX | GSE36777 | download |
O. sativa | MEX | GSE39429 | download |
O. sativa | MEX | GSE36040 | download |
O. sativa | MEX | GSE62896 | download |
P. falciparum | MEX | GSE59097 | download |
P. falciparum | MEX | GSE116341 RNA-seq | download |
P. falciparum | MEX | GSE19468 | download |
P. falciparum | MEX | GSE66669 | download |
P. falciparum | MEX | GSE59099 | download |
R. norvegicus | MEX | GSE40348 | download |
R. norvegicus | MEX | GSE4776 | download |
R. norvegicus | MEX | GSE71306 | download |
R. norvegicus | MEX | GSE31709 | download |
R. norvegicus | MEX | GSE75658 | download |
R. norvegicus | MEX | GSE16233 | download |
R. norvegicus | MEX | GSE134715 RNA-seq | download |
R. norvegicus | MEX | GSE29488 | download |
R. norvegicus | MEX | GSE24363 | download |
R. norvegicus | MEX | GSE70012 RNA-seq | download |
R. norvegicus | MEX | GSE23093 | download |
R. norvegicus | MEX | GSE116760 RNA-seq | download |
R. norvegicus | MEX | GSE63362 | download |
R. norvegicus | MEX | GSE47752 | download |
R. norvegicus | MEX | GSE57816 | download |
R. norvegicus | MEX | GSE69334 | download |
S. cerevisiae | MEX | GSE8561 | download |
S. cerevisiae | MEX | GSE33099 | download |
S. cerevisiae | MEX | GSE102475 RNA-seq | download |
S. cerevisiae | MEX | GSE33097 | download |
S. cerevisiae | MEX | Gasch et al. (2000) | download |
S. cerevisiae | MEX | GSE26169 | download |
S. cerevisiae | MEX | GSE45115 | download |
S. cerevisiae | MEX | GSE11452 | download |
S. cerevisiae | MEX | GSE25909 | download |
S. cerevisiae | MEX | GSE19116 | download |
S. cerevisiae | MEX | GSE122392 RNA-seq | download |
S. cerevisiae | MEX | GSE5499 | download |
S. cerevisiae | MEX | GSE69682 RNA-seq | download |
S. pombe | MEX | GSE4284 | download |
S. pombe | MEX | GSE56761 RNA-seq | download |
S. scrofa | MEX | GSE139512 RNA-seq | download |
S. scrofa | MEX | GSE97374 | download |
S. scrofa | MEX | GSE32112 | download |
S. scrofa | MEX | GSE83932 | download |
S. scrofa | MEX | GSE108570 RNA-seq | download |
S. solfataricus | MEX | GSE12235 | download |
B. taurus | MIR | MirTarBase Bos_taurus | download |
C. elegans | MIR | MirTarBase Caenorhabditis_elegans | download |
C. elegans | MIR | microRNA.org Aug 2010 | download |
D. melanogaster | MIR | MirTarBase Drosophila_melanogaster | download |
D. melanogaster | MIR | microRNA.org Aug 2010 | download |
H. sapiens | MIR | microRNA.org Aug 2010 | download |
H. sapiens | MIR | MirTarBase Homo_sapiens | download |
M. musculus | MIR | microRNA.org Aug 2010 | download |
M. musculus | MIR | MirTarBase Mus_musculus | download |
R. norvegicus | MIR | MirTarBase Rattus_norvegicus | download |
R. norvegicus | MIR | microRNA.org Aug 2010 | download |
H. sapiens | PEX | PEX h.sapiens | download |
A. thaliana | PHP | phylogenetic profile Arabidopsis_thaliana | download |
All | PHP | phylogenetic tree | download |
B. subtilis | PHP | phylogenetic profile Bacillus_subtilis_strain_168 | download |
B. taurus | PHP | phylogenetic profile Bos_taurus | download |
C. elegans | PHP | phylogenetic profile Caenorhabditis_elegans | download |
C. familiaris | PHP | phylogenetic profile Canis_familiaris | download |
C. intestinalis | PHP | phylogenetic profile Ciona_intestinalis | download |
D. discoideum | PHP | phylogenetic profile Dictyostelium_discoideum | download |
D. melanogaster | PHP | phylogenetic profile Drosophila_melanogaster | download |
D. rerio | PHP | phylogenetic profile Danio_rerio | download |
E. coli | PHP | phylogenetic profile Escherichia_coli | download |
G. gallus | PHP | phylogenetic profile Gallus_gallus | download |
H. sapiens | PHP | phylogenetic profile Homo_sapiens | download |
M. jannaschii | PHP | phylogenetic profile Methanocaldococcus_jannaschii | download |
M. musculus | PHP | phylogenetic profile Mus_musculus | download |
O. sativa | PHP | phylogenetic profile Oryza_sativa | download |
P. falciparum | PHP | phylogenetic profile Plasmodium_falciparum | download |
R. norvegicus | PHP | phylogenetic profile Rattus_norvegicus | download |
S. cerevisiae | PHP | phylogenetic profile Saccharomyces_cerevisiae_S288c | download |
S. pombe | PHP | phylogenetic profile Schizosaccharomyces_pombe | download |
S. scrofa | PHP | phylogenetic profile Sus_scrofa | download |
S. solfataricus | PHP | phylogenetic profile Saccharolobus_solfataricus | download |
A. thaliana | PIN | PIN a.thaliana iRefIndex 16 | download |
B. subtilis | PIN | PIN b.subtilis iRefIndex 16 | download |
B. taurus | PIN | PIN b.taurus iRefIndex 16 | download |
C. elegans | PIN | PIN c.elegans iRefIndex 16 | download |
C. familiaris | PIN | PIN c.familiaris iRefIndex 16 | download |
C. intestinalis | PIN | PIN c.intestinalis iRefIndex 16 | download |
D. discoideum | PIN | PIN d.discoideum iRefIndex 16 | download |
D. rerio | PIN | PIN d.rerio iRefIndex 16 | download |
E. coli | PIN | PIN e.coli iRefIndex 16 | download |
G. gallus | PIN | PIN g.gallus iRefIndex 16 | download |
H. sapiens | PIN | PIN h.sapiens iRefIndex 16 | download |
M. musculus | PIN | PIN m.musculus iRefIndex 16 | download |
O. sativa | PIN | PIN o.sativa iRefIndex 16 | download |
P. falciparum | PIN | PIN p.falciparum iRefIndex 16 | download |
R. norvegicus | PIN | PIN r.norvegicus iRefIndex 16 | download |
S. cerevisiae | PIN | PIN s.cerevisiae iRefIndex 16 | download |
S. pombe | PIN | PIN s.pombe iRefIndex 16 | download |
S. scrofa | PIN | PIN s.scrofa iRefIndex 16 | download |
A. thaliana | QMS | Pax-DB 4.1 Arabidopsis_thaliana | download |
D. rerio | QMS | Pax-DB 4.1 Danio_rerio | download |
H. sapiens | QMS | Pax-DB 4.1 Homo_sapiens | download |
M. musculus | QMS | Pax-DB 4.1 Mus_musculus | download |
R. norvegicus | QMS | Pax-DB 4.1 Rattus_norvegicus | download |
A. thaliana | SCL | Subcellular component | download |
B. subtilis | SCL | Subcellular component | download |
B. taurus | SCL | Subcellular component | download |
C. elegans | SCL | Subcellular component | download |
C. familiaris | SCL | Subcellular component | download |
C. intestinalis | SCL | Subcellular component | download |
D. discoideum | SCL | Subcellular component | download |
D. melanogaster | SCL | Subcellular component | download |
D. rerio | SCL | Subcellular component | download |
E. coli | SCL | Subcellular component | download |
G. gallus | SCL | Subcellular component | download |
H. sapiens | SCL | Subcellular component | download |
M. musculus | SCL | Subcellular component | download |
O. sativa | SCL | Subcellular component | download |
P. falciparum | SCL | Subcellular component | download |
R. norvegicus | SCL | Subcellular component | download |
S. cerevisiae | SCL | Subcellular component | download |
S. pombe | SCL | Subcellular component | download |
S. scrofa | SCL | Subcellular component | download |
S. solfataricus | SCL | Subcellular component | download |
C. elegans | TFB | Encode Caenorhabditis elegans | download |
D. melanogaster | TFB | Encode Drosophila melanogaster | download |
H. sapiens | TFB | Encode Human | download |
M. musculus | TFB | Encode Mus musculus | download |
S. cerevisiae | TFB | yeastract 2011 Saccharomyces cerevisiae S288c | download |
S. cerevisiae | TFB | Yeastract 2016 Saccharomyces cerevisiae S288c | download |