Species:

Escherichia coli (strain K12) (83333)

Expansion Algorithm: Genes as group

Link/Direction min confidence: 0.5/1.0

Genes/Links: 16/118

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Interaction partners
Confidence
Network
Evidence type
DOM
GIN
GRG
MEX
MIR
PEX
PHP
PIN
SCL
TFB
Species
ATH
BSU
BTA
CEL
CLU
CIN
DME
DDI
DRE
ECO
GGA
HSA
MJA
MMU
MTU
OSA
PFA
RNO
SCE
SPO
SSC
SSO
GS

0.951
Metabolic
0.712
PPI

0.961
Metabolic
0.941
PPI

0.882
Metabolic
0.733
PPI

0.964
Metabolic
0.89
PPI

0.962
PPI
0.919
Metabolic

0.911
Metabolic
0.702
Operon

0.978
PPI
0.882
Metabolic

0.966
Metabolic
0.833
PPI

0.926
Metabolic
0.917
PPI

0.989
Operon
0.928
Metabolic

0.938
Metabolic
0.89
PPI

0.931
Metabolic
0.856
PPI

0.927
PPI
0.857
Metabolic

0.956
Metabolic
0.946
PPI

0.975
PPI
0.922
Metabolic

Interaction partners
Confidence
Network
Evidence type
DOM
GIN
GRG
MEX
MIR
PEX
PHP
PIN
SCL
TFB
Species
ATH
BSU
BTA
CEL
CLU
CIN
DME
DDI
DRE
ECO
GGA
HSA
MJA
MMU
MTU
OSA
PFA
RNO
SCE
SPO
SSC
SSO
GS

0.994
Operon
0.984
Metabolic

0.994
Operon
0.982
Metabolic

0.992
Operon
0.973
Metabolic

0.993
PPI
0.971
Metabolic

0.98
Metabolic
0.963
PPI

0.981
PPI
0.959
Metabolic

0.956
Metabolic
0.946
PPI

0.944
PPI
0.85
Complex
0.804
Metabolic

0.93
Metabolic
0.804
PPI

0.933
Metabolic
0.62
Operon

0.939
Operon
0.925
Metabolic

0.945
PPI
0.876
Metabolic

0.94
Operon
0.923
Metabolic

0.873
Metabolic
0.788
PPI

0.804
PPI
0.713
Metabolic
0.674
Operon

0.972
Metabolic
0.922
PPI

0.97
Metabolic
0.953
PPI

0.99
PPI
0.949
Metabolic

0.98
Metabolic
0.963
PPI

0.984
Metabolic
0.913
PPI

0.983
Metabolic
0.958
PPI

0.953
Metabolic
0.931
PPI

0.964
Metabolic
0.89
PPI

0.943
PPI
0.902
Metabolic

0.958
PPI
0.952
Metabolic

0.942
Metabolic
0.859
PPI

0.956
Metabolic
0.889
Operon

0.946
PPI
0.925
Metabolic

0.823
Metabolic
0.657
Operon

0.88
Metabolic
0.877
Operon

0.931
Metabolic
0.856
PPI

0.954
PPI
0.839
Metabolic

0.969
PPI
0.933
Metabolic

0.846
Metabolic
0.5
PPI

0.922
PPI
0.849
Metabolic

0.911
Metabolic
0.776
Operon

0.868
PPI
0.831
Metabolic

0.893
Operon
0.848
Metabolic

0.823
Metabolic
0.657
Operon

0.732
Metabolic
0.519
Operon

0.873
Metabolic
0.788
PPI

0.792
Metabolic
0.519
Operon

0.851
PPI
0.752
Operon

0.794
Metabolic
0.764
Operon

0.971
PPI
0.902
Metabolic

0.965
Metabolic
0.936
PPI

0.915
PPI
0.864
Metabolic

0.927
PPI
0.857
Metabolic

0.943
PPI
0.902
Metabolic

0.954
PPI
0.872
Metabolic

0.93
Metabolic
0.804
PPI

0.947
PPI
0.667
Metabolic

0.938
PPI
0.91
Metabolic

0.84
Metabolic
0.781
PPI

0.872
Metabolic
0.865
Operon

0.893
Operon
0.848
Metabolic

0.843
Operon
0.743
Metabolic

0.808
Metabolic
0.798
PPI

0.824
Metabolic
0.713
PPI

0.994
Operon
0.975
Metabolic

0.985
PPI
0.961
Metabolic

0.938
Metabolic
0.89
PPI

0.922
PPI
0.84
Metabolic

0.957
PPI
0.943
Metabolic

0.969
PPI
0.933
Metabolic

0.969
Metabolic
0.955
PPI

0.951
Metabolic
0.925
PPI

0.939
Operon
0.925
Metabolic

0.897
Metabolic
0.789
Operon

0.938
PPI
0.91
Metabolic

0.89
Metabolic
0.701
Operon

0.757
Metabolic
0.738
Operon

0.946
PPI
0.925
Metabolic

0.733
PPI
0.716
Metabolic
0.519
Operon

0.986
PPI
0.914
Metabolic

0.985
PPI
0.961
Metabolic

0.96
Metabolic
0.949
PPI
0.85
Complex

0.978
PPI
0.913
Metabolic

0.975
PPI
0.922
Metabolic

0.954
PPI
0.872
Metabolic

0.972
Operon
0.94
Metabolic

0.942
Metabolic
0.859
PPI

0.922
PPI
0.849
Metabolic

0.878
Metabolic
0.519
Operon

0.94
Metabolic
0.897
Operon
0.85
Complex

0.94
Operon
0.923
Metabolic

0.94
Metabolic
0.93
PPI

0.85
Complex
0.686
Metabolic
0.531
Operon

0.835
PPI
0.812
Operon
0.764
Metabolic

0.97
Metabolic
0.953
PPI

0.993
Metabolic
0.98
PPI
0.9
Complex

0.953
Metabolic
0.839
PPI

0.965
Metabolic
0.936
PPI

0.975
PPI
0.958
Metabolic

0.926
Metabolic
0.917
PPI

0.963
PPI
0.946
Metabolic

0.957
PPI
0.943
Metabolic

0.968
Operon
0.927
Metabolic

0.869
Metabolic
0.819
PPI

0.877
PPI
0.85
Complex
0.668
Metabolic

0.851
PPI
0.752
Operon

0.686
PPI
0.542
Metabolic
0.519
Operon

0.804
PPI
0.713
Metabolic
0.674
Operon

0.835
PPI
0.812
Operon
0.764
Metabolic

0.991
PPI
0.976
Metabolic

0.988
Metabolic
0.986
PPI

0.992
PPI
0.98
Metabolic

0.981
PPI
0.959
Metabolic

0.961
Metabolic
0.941
PPI

0.983
Metabolic
0.958
PPI

0.975
PPI
0.958
Metabolic

0.98
PPI
0.911
Metabolic

0.965
PPI
0.945
Metabolic

0.974
Operon
0.904
Metabolic

0.972
Operon
0.94
Metabolic

0.969
Metabolic
0.955
PPI

0.906
Metabolic
0.519
Operon

0.843
Operon
0.743
Metabolic

0.732
Metabolic
0.519
Operon

0.994
Operon
0.975
Metabolic

0.925
Metabolic
0.72
PPI

0.989
Operon
0.928
Metabolic

0.978
PPI
0.913
Metabolic

0.954
PPI
0.839
Metabolic

0.845
Metabolic
0.519
Operon

0.974
Operon
0.904
Metabolic

0.967
Operon
0.746
Metabolic

0.947
PPI
0.667
Metabolic

0.918
Metabolic
0.808
PPI

0.945
PPI
0.876
Metabolic

0.927
Operon
0.916
Metabolic

0.869
Metabolic
0.819
PPI

0.88
Metabolic
0.877
Operon

0.769
Metabolic
0.598
PPI

0.915
Metabolic
0.845
Operon

0.911
Metabolic
0.702
Operon

0.865
Metabolic
0.519
Operon

0.845
Metabolic
0.519
Operon

0.933
Metabolic
0.62
Operon

0.874
Metabolic
0.727
Operon

0.956
Metabolic
0.889
Operon

0.878
Metabolic
0.519
Operon

0.89
Metabolic
0.701
Operon

0.911
Metabolic
0.776
Operon

0.872
Metabolic
0.865
Operon

0.906
Metabolic
0.519
Operon

0.829
Metabolic
0.785
Operon

0.686
PPI
0.542
Metabolic
0.519
Operon

0.994
Operon
0.984
Metabolic

0.994
Operon
0.921
Metabolic

0.992
Operon
0.928
Metabolic

0.915
Metabolic
0.845
Operon

0.99
PPI
0.949
Metabolic

0.971
PPI
0.902
Metabolic

0.976
PPI
0.811
Metabolic

0.978
PPI
0.882
Metabolic

0.986
PPI
0.914
Metabolic

0.98
PPI
0.911
Metabolic

0.936
PPI
0.845
Metabolic

0.967
Operon
0.746
Metabolic

0.757
Metabolic
0.738
Operon

0.868
PPI
0.831
Metabolic

0.877
PPI
0.85
Complex
0.668
Metabolic

0.972
Metabolic
0.922
PPI

0.993
PPI
0.971
Metabolic

0.951
Metabolic
0.712
PPI

0.988
Metabolic
0.986
PPI

0.952
PPI
0.947
Metabolic

0.953
Metabolic
0.839
PPI

0.993
PPI
0.929
Metabolic

0.969
PPI
0.93
Metabolic

0.96
Metabolic
0.949
PPI
0.85
Complex

0.922
PPI
0.84
Metabolic

0.936
PPI
0.845
Metabolic

0.846
Metabolic
0.5
PPI

0.829
Metabolic
0.785
Operon

0.769
Metabolic
0.598
PPI

0.824
Metabolic
0.713
PPI

0.993
Metabolic
0.98
PPI
0.9
Complex

0.952
PPI
0.947
Metabolic

0.992
PPI
0.98
Metabolic

0.925
Metabolic
0.72
PPI

0.99
PPI
0.949
Metabolic

0.953
Metabolic
0.931
PPI

0.882
Metabolic
0.733
PPI

0.976
PPI
0.811
Metabolic

0.935
PPI
0.895
Metabolic

0.944
PPI
0.85
Complex
0.804
Metabolic

0.84
Metabolic
0.781
PPI

0.85
Complex
0.686
Metabolic
0.531
Operon

0.733
PPI
0.716
Metabolic
0.519
Operon

0.992
Operon
0.928
Metabolic

0.992
Operon
0.973
Metabolic

0.966
Metabolic
0.833
PPI

0.97
PPI
0.939
Metabolic

0.969
PPI
0.93
Metabolic

0.935
PPI
0.895
Metabolic

0.958
PPI
0.952
Metabolic

0.965
PPI
0.945
Metabolic

0.968
Operon
0.927
Metabolic

0.874
Metabolic
0.727
Operon

0.951
Metabolic
0.925
PPI

0.918
Metabolic
0.808
PPI

0.94
Metabolic
0.93
PPI

0.808
Metabolic
0.798
PPI

0.794
Metabolic
0.764
Operon

0.994
Operon
0.982
Metabolic

0.994
Operon
0.921
Metabolic

0.991
PPI
0.976
Metabolic

0.915
PPI
0.864
Metabolic

0.993
PPI
0.929
Metabolic

0.984
Metabolic
0.913
PPI

0.99
PPI
0.949
Metabolic

0.962
PPI
0.919
Metabolic

0.97
PPI
0.939
Metabolic

0.865
Metabolic
0.519
Operon

0.963
PPI
0.946
Metabolic

0.897
Metabolic
0.789
Operon

0.927
Operon
0.916
Metabolic

0.94
Metabolic
0.897
Operon
0.85
Complex

0.792
Metabolic
0.519
Operon

Gene symbol Description UniProt ID Ensembl ID NCBI ID Node degree KEGG pathways Node color
tesB TESB_ECOLI Acyl-CoA thioesterase 2 P0AGG2 b0452 66671246 15 of 489 01040

Gene symbol Description UniProt ID Ensembl ID NCBI ID Node degree KEGG pathways Node color
mnmA MNMA_ECOLI tRNA-specific 2-thiouridylase MnmA P25745 b1133 66670600 15 of 851 04122
prfA RF1_ECOLI Peptide chain release factor RF1 P0A7I0 b1211 66674969 15 of 757
yicI XYLS_ECOLI Alpha-xylosidase P31434 b3656 948169 14 of 647
gloB GLO2_ECOLI Hydroxyacylglutathione hydrolase GloB P0AC84 b0212 944902 15 of 694 00620, 01100
rbsK RBSK_ECOLI Ribokinase P0A9J6 b3752 66672344 15 of 729 00030, 01100
lon LON_ECOLI Lon protease P0A9M0 b0439 67416486 15 of 952
rpsN RS14_ECOLI 30S ribosomal protein S14 P0AG59 b3307 67415348 15 of 1087 03010
lipA LIPA_ECOLI Lipoyl synthase P60716 b0628 66671098 15 of 883 00785, 01100, 01240
araB ARAB_ECOLI Ribulokinase P08204 b0063 946017 15 of 683 00040, 01100
add ADD_ECOLI Adenosine deaminase P22333 b1623 66674486 14 of 710 00230, 01100, 01232
mnmE MNME_ECOLI tRNA modification GTPase MnmE P25522 b3706 948222 15 of 856
era ERA_ECOLI GTPase Era P06616 b2566 75172680 15 of 768
rpsP RS16_ECOLI 30S ribosomal protein S16 P0A7T3 b2609 67414073 13 of 978 03010
cysS SYC_ECOLI Cysteine--tRNA ligase P21888 b0526 946969 15 of 740 00970
gltX SYE_ECOLI Glutamate--tRNA ligase P04805 b2400 66673731 15 of 906 00860, 00970, 01100, 01110, 01120, 01240

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