Species:

Escherichia coli (strain K12) (83333)

Expansion Algorithm: Genes as group

Link/Direction min confidence: 0.5/1.0

Genes/Links: 16/111

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Interaction partners
Confidence
Network
Evidence type
DOM
GIN
GRG
MEX
MIR
PEX
PHP
PIN
SCL
TFB
Species
ATH
BSU
BTA
CEL
CLU
CIN
DME
DDI
DRE
ECO
GGA
HSA
MJA
MMU
MTU
OSA
PFA
RNO
SCE
SPO
SSC
SSO
GS

0.988
Operon
0.946
Metabolic

0.991
Operon
0.945
Metabolic

0.972
PPI
0.955
Metabolic

0.972
PPI
0.955
Metabolic

0.884
Metabolic
0.5
PPI

0.85
Metabolic
0.55
PPI

0.977
PPI
0.903
Metabolic

0.966
PPI
0.945
Metabolic

0.92
PPI
0.88
Metabolic

0.892
PPI
0.838
Metabolic

0.863
PPI
0.856
Metabolic

0.939
Metabolic
0.906
PPI

0.936
Metabolic
0.864
PPI

0.988
PPI
0.974
Metabolic

0.846
Metabolic
0.634
PPI

Interaction partners
Confidence
Network
Evidence type
DOM
GIN
GRG
MEX
MIR
PEX
PHP
PIN
SCL
TFB
Species
ATH
BSU
BTA
CEL
CLU
CIN
DME
DDI
DRE
ECO
GGA
HSA
MJA
MMU
MTU
OSA
PFA
RNO
SCE
SPO
SSC
SSO
GS

0.978
Operon
0.972
Metabolic

0.992
Operon
0.98
Metabolic

0.994
PPI
0.993
Metabolic

0.892
PPI
0.838
Metabolic

0.99
Operon
0.921
Metabolic

0.878
Metabolic
0.869
Operon

0.967
Metabolic
0.876
PPI

0.967
Metabolic
0.851
PPI

0.86
Metabolic
0.758
Operon

0.924
Metabolic
0.869
Operon

0.85
Metabolic
0.824
PPI

0.949
Metabolic
0.887
PPI

0.854
PPI
0.519
Operon

0.848
Operon
0.5
PPI

0.994
PPI
0.993
Metabolic

0.969
Metabolic
0.808
PPI

0.969
Metabolic
0.808
PPI

0.846
Metabolic
0.634
PPI

0.955
Metabolic
0.83
PPI

0.927
Metabolic
0.67
PPI

0.974
PPI
0.868
Metabolic

0.881
Metabolic
0.832
Operon

0.946
PPI
0.939
Metabolic

0.957
Metabolic
0.932
Operon

0.862
Metabolic
0.828
Operon

0.828
Operon
0.786
Metabolic

0.844
Metabolic
0.708
Operon

0.872
Operon
0.815
Metabolic

0.542
Metabolic
0.519
Operon

0.994
Operon
0.978
Metabolic

0.991
Metabolic
0.987
PPI

0.863
PPI
0.856
Metabolic

0.969
Metabolic
0.962
PPI

0.981
Metabolic
0.969
PPI

0.95
PPI
0.944
Metabolic

0.832
Metabolic
0.782
PPI

0.938
PPI
0.925
Metabolic

0.871
Metabolic
0.845
PPI

0.838
Metabolic
0.5
PPI

0.924
Metabolic
0.869
Operon

0.828
Operon
0.786
Metabolic

0.946
PPI
0.937
Operon

0.915
Metabolic
0.856
Operon

0.914
Metabolic
0.841
Operon

0.956
Operon
0.887
Metabolic

0.991
Operon
0.945
Metabolic

0.99
PPI
0.94
Metabolic

0.96
Metabolic
0.915
PPI

0.9
Metabolic
0.798
PPI

0.979
Operon
0.941
Metabolic

0.978
Operon
0.941
Metabolic

0.963
Metabolic
0.953
Operon

0.838
Metabolic
0.5
PPI

0.753
PPI
0.708
Metabolic

0.85
Metabolic
0.824
PPI

0.942
Operon
0.921
Metabolic

0.872
Operon
0.815
Metabolic

0.849
Metabolic
0.77
PPI

0.993
PPI
0.97
Metabolic
0.9
Complex

0.884
Metabolic
0.5
PPI

0.966
PPI
0.927
Metabolic

0.949
PPI
0.883
Metabolic

0.942
Metabolic
0.917
Operon

0.946
PPI
0.937
Operon

0.844
Metabolic
0.708
Operon

0.91
Metabolic
0.75
Operon

0.854
PPI
0.519
Operon

0.633
Metabolic
0.5
PPI

0.84
Operon
0.807
PPI

0.994
Operon
0.978
Metabolic

0.991
Metabolic
0.989
PPI

0.96
Metabolic
0.915
PPI

0.961
PPI
0.951
Metabolic

0.939
Metabolic
0.906
PPI

0.967
PPI
0.966
Metabolic

0.973
PPI
0.968
Metabolic

0.984
PPI
0.963
Metabolic

0.86
Metabolic
0.758
Operon

0.905
PPI
0.851
Metabolic

0.966
PPI
0.927
Metabolic

0.884
PPI
0.816
Metabolic

0.862
Metabolic
0.828
Operon

0.75
Operon
0.747
Metabolic

0.75
Operon
0.747
Metabolic

0.994
Operon
0.99
Metabolic

0.99
Metabolic
0.985
PPI

0.966
PPI
0.945
Metabolic

0.953
Metabolic
0.892
PPI

0.955
Metabolic
0.83
PPI

0.97
Metabolic
0.932
PPI

0.938
PPI
0.925
Metabolic

0.905
PPI
0.851
Metabolic

0.963
Operon
0.812
Metabolic

0.949
Metabolic
0.887
PPI

0.942
Operon
0.921
Metabolic

0.937
Operon
0.841
Metabolic

0.897
Operon
0.78
Metabolic

0.736
Metabolic
0.519
Operon

0.84
Operon
0.807
PPI

0.956
Operon
0.887
Metabolic

0.988
Operon
0.946
Metabolic

0.879
Metabolic
0.675
PPI

0.961
PPI
0.951
Metabolic

0.981
Operon
0.847
Metabolic

0.871
Metabolic
0.845
PPI

0.947
Operon
0.882
Metabolic

0.689
Metabolic
0.678
PPI

0.758
Metabolic
0.704
Operon

0.758
Metabolic
0.704
Operon

0.963
Operon
0.812
Metabolic

0.542
Metabolic
0.519
Operon

0.633
Metabolic
0.5
PPI

0.813
PPI
0.783
Metabolic

0.993
Operon
0.978
Metabolic

0.992
Operon
0.98
Metabolic

0.993
PPI
0.97
Metabolic
0.9
Complex

0.85
Metabolic
0.55
PPI

0.955
Metabolic
0.953
PPI

0.967
PPI
0.966
Metabolic

0.953
Metabolic
0.892
PPI

0.965
Metabolic
0.918
PPI

0.95
PPI
0.944
Metabolic

0.891
Metabolic
0.5
PPI

0.689
Metabolic
0.678
PPI

0.753
PPI
0.708
Metabolic

0.965
Metabolic
0.57
PPI

0.946
PPI
0.939
Metabolic

0.95
Operon
0.912
Metabolic

0.962
Metabolic
0.96
PPI

0.98
PPI
0.978
Metabolic

0.955
Metabolic
0.953
PPI

0.936
Metabolic
0.864
PPI

0.969
Metabolic
0.962
PPI

0.973
PPI
0.968
Metabolic

0.878
Metabolic
0.869
Operon

0.881
Metabolic
0.832
Operon

0.949
PPI
0.883
Metabolic

0.937
Operon
0.841
Metabolic

0.849
Metabolic
0.77
PPI

0.813
PPI
0.783
Metabolic

0.972
PPI
0.955
Metabolic

0.99
Metabolic
0.985
PPI

0.99
Metabolic
0.988
PPI

0.969
Metabolic
0.808
PPI

0.978
Operon
0.941
Metabolic

0.967
Metabolic
0.851
PPI

0.965
Metabolic
0.57
PPI

0.758
Metabolic
0.704
Operon

0.956
Metabolic
0.945
PPI

0.897
Operon
0.78
Metabolic

0.825
Metabolic
0.582
Operon

0.914
Metabolic
0.841
Operon

0.75
Operon
0.747
Metabolic

0.978
Operon
0.972
Metabolic

0.993
Operon
0.978
Metabolic

0.991
Metabolic
0.987
PPI

0.99
PPI
0.94
Metabolic

0.977
PPI
0.903
Metabolic

0.98
PPI
0.978
Metabolic

0.99
Operon
0.964
Metabolic

0.984
PPI
0.963
Metabolic

0.981
Operon
0.847
Metabolic

0.962
Metabolic
0.884
PPI

0.97
Metabolic
0.932
PPI

0.956
Metabolic
0.952
PPI

0.956
Metabolic
0.945
PPI

0.957
Metabolic
0.932
Operon

0.942
Metabolic
0.917
Operon

0.99
Metabolic
0.975
PPI

0.99
Metabolic
0.988
PPI

0.988
PPI
0.974
Metabolic

0.927
Metabolic
0.67
PPI

0.832
Metabolic
0.782
PPI

0.962
Metabolic
0.884
PPI

0.891
Metabolic
0.5
PPI

0.947
Operon
0.882
Metabolic

0.963
Metabolic
0.953
Operon

0.884
PPI
0.816
Metabolic

0.897
Operon
0.78
Metabolic

0.848
Operon
0.5
PPI

0.962
Metabolic
0.96
PPI

0.991
Metabolic
0.989
PPI

0.879
Metabolic
0.675
PPI

0.9
Metabolic
0.798
PPI

0.92
PPI
0.88
Metabolic

0.99
Operon
0.964
Metabolic

0.99
Operon
0.921
Metabolic

0.981
Metabolic
0.969
PPI

0.974
PPI
0.868
Metabolic

0.95
Operon
0.912
Metabolic

0.825
Metabolic
0.674
Operon

0.825
Metabolic
0.582
Operon

0.91
Metabolic
0.75
Operon

0.736
Metabolic
0.519
Operon

0.994
Operon
0.99
Metabolic

0.99
Metabolic
0.975
PPI

0.972
PPI
0.955
Metabolic

0.969
Metabolic
0.808
PPI

0.965
Metabolic
0.918
PPI

0.979
Operon
0.941
Metabolic

0.967
Metabolic
0.876
PPI

0.758
Metabolic
0.704
Operon

0.956
Metabolic
0.952
PPI

0.915
Metabolic
0.856
Operon

0.825
Metabolic
0.674
Operon

0.897
Operon
0.78
Metabolic

0.75
Operon
0.747
Metabolic

Gene symbol Description UniProt ID Ensembl ID NCBI ID Node degree KEGG pathways Node color
ubiA UBIA_ECOLI 4-hydroxybenzoate octaprenyltransferase P0AGK1 b4040 75169495 15 of 684 00130, 01100, 01110, 01240

Gene symbol Description UniProt ID Ensembl ID NCBI ID Node degree KEGG pathways Node color
pgi G6PI_ECOLI Glucose-6-phosphate isomerase P0A6T1 b4025 75169478 14 of 816 00010, 00030, 00500, 00520, 01100, 01110, 01120, 01200, 01250
mdh MDH_ECOLI Malate dehydrogenase P61889 b3236 67415932 15 of 824 00020, 00270, 00620, 00630, 00680, 01100, 01110, 01120, 01200
hisS SYH_ECOLI Histidine--tRNA ligase P60906 b2514 66673598 15 of 765 00970
arnC ARNC_ECOLI Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase P77757 b2254 75205696 14 of 683 00520, 01100, 01503
fdx FER_ECOLI 2Fe-2S ferredoxin P0A9R4 b2525 67416909 11 of 443
tyrS SYY_ECOLI Tyrosine--tRNA ligase P0AGJ9 b1637 66674471 15 of 878 00970
ydiS YDIS_ECOLI Probable electron transfer flavoprotein-quinone oxidoreductase YdiS P77337 b1699 946212 15 of 763
msbA MSBA_ECOLI ATP-dependent lipid A-core flippase P60752 b0914 66670810 14 of 769 02010
iscS ISCS_ECOLI Cysteine desulfurase IscS P0A6B7 b2530 67416914 15 of 882 00730, 01100, 01240, 04122
pyrD PYRD_ECOLI Dihydroorotate dehydrogenase (quinone) P0A7E1 b0945 75204036 12 of 794 00240, 01100, 01240
fixA FIXA_ECOLI Protein FixA P60566 b0041 58460821 13 of 749
metG SYM_ECOLI Methionine--tRNA ligase P00959 b2114 946643 15 of 892 00450, 00970, 01100
ygcN YGCN_ECOLI Probable electron transfer flavoprotein-quinone oxidoreductase YgcN Q46904 b2766 946114 12 of 664
rlmE RLME_ECOLI Ribosomal RNA large subunit methyltransferase E P0C0R7 b3179 67415987 14 of 679
ydiQ YDIQ_ECOLI Putative electron transfer flavoprotein subunit YdiQ P76201 b1697 75203554 13 of 731

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